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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")
In most cases, you don't need to download the package archive at all.
LungCancerLines
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.
Reads from Two Lung Cancer Cell Lines
Bioconductor version: 3.1
Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Author: Cory Barr, Michael Lawrence
Maintainer: Cory Barr <barr.cory at gene.com>
Citation (from within R,
enter citation("LungCancerLines")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome, LungCancerData, RNASeqData |
| Version | 0.6.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | Rsamtools |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gmapR, HTSeqGenie, VariantTools |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | LungCancerLines_0.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/LungCancerLines/ |
| Package Downloads Report | Download Stats |
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