To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HTSeqGenie")

In most cases, you don't need to download the package archive at all.

HTSeqGenie

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see HTSeqGenie.

A NGS analysis pipeline.

Bioconductor version: 3.1

Libraries to perform NGS analysis.

Author: Gregoire Pau, Jens Reeder

Maintainer: Jens Reeder <reeder.jens at gene.com>

Citation (from within R, enter citation("HTSeqGenie")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HTSeqGenie")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HTSeqGenie")

biocViews	Software
Version	3.18.0
In Bioconductor since	BioC 2.11 (R-2.15) (3.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), gmapR(>= 1.6.4), ShortRead(>= 1.19.13), VariantAnnotation(>= 1.8.3)
Imports	BiocGenerics(>= 0.2.0), IRanges(>= 1.21.39), GenomicRanges(>= 1.7.12), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.6.1), hwriter (>= 1.3.0), Cairo (>= 1.5.5), GenomicFeatures(>= 1.9.31), BiocParallel, parallel, tools, rtracklayer(>= 1.17.19), GenomicAlignments, VariantTools(>= 1.6.1)
LinkingTo
Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines, org.Hs.eg.db, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	HTSeqGenie_3.18.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/HTSeqGenie/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/HTSeqGenie/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: