netresponse
Functional Network Analysis
Bioconductor version: Release (3.20)
Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.
Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R, enter
citation("netresponse")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("netresponse")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netresponse")| microbiome R package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription |
| Version | 1.66.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (14 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods, minet, mclust, reshape2 |
| Imports | ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer |
| System Requirements | |
| URL | https://github.com/antagomir/netresponse |
| Bug Reports | https://github.com/antagomir/netresponse/issues |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | netresponse_1.66.0.tar.gz |
| Windows Binary (x86_64) | netresponse_1.66.0.zip |
| macOS Binary (x86_64) | netresponse_1.66.0.tgz |
| macOS Binary (arm64) | netresponse_1.66.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/netresponse |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/netresponse |
| Bioc Package Browser | https://code.bioconductor.org/browse/netresponse/ |
| Package Short Url | https://bioconductor.org/packages/netresponse/ |
| Package Downloads Report | Download Stats |