ffpe
Quality assessment and control for FFPE microarray expression data
Bioconductor version: Release (3.20)
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
Author: Levi Waldron
Maintainer: Levi Waldron <lwaldron.research at gmail.com>
Citation (from within R, enter
citation("ffpe")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ffpe")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ffpe")| ffpe package user guide | R Script | |
| Reference Manual |
Details
| biocViews | GeneExpression, Microarray, QualityControl, Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12.5 years) |
| License | GPL (>2) |
| Depends | R (>= 2.10.0), TTR, methods |
| Imports | Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc |
| System Requirements | |
| URL |
See More
| Suggests | genefilter, ffpeExampleData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ffpe_1.50.0.tar.gz |
| Windows Binary (x86_64) | ffpe_1.50.0.zip |
| macOS Binary (x86_64) | ffpe_1.50.0.tgz |
| macOS Binary (arm64) | ffpe_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ffpe |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ffpe |
| Bioc Package Browser | https://code.bioconductor.org/browse/ffpe/ |
| Package Short Url | https://bioconductor.org/packages/ffpe/ |
| Package Downloads Report | Download Stats |