erccdashboard
Assess Differential Gene Expression Experiments with ERCC Controls
Bioconductor version: Release (3.20)
Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.
Author: Sarah Munro, Steve Lund
Maintainer: Sarah Munro <sarah.munro at gmail.com>
Citation (from within R, enter
citation("erccdashboard")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("erccdashboard")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("erccdashboard")| erccdashboard introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray |
| Version | 1.40.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | GPL (>=2) |
| Depends | R (>= 4.0), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0) |
| Imports | edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr, knitr |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | erccdashboard_1.40.0.tar.gz |
| Windows Binary (x86_64) | erccdashboard_1.40.0.zip |
| macOS Binary (x86_64) | erccdashboard_1.40.0.tgz |
| macOS Binary (arm64) | erccdashboard_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/erccdashboard |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/erccdashboard |
| Bioc Package Browser | https://code.bioconductor.org/browse/erccdashboard/ |
| Package Short Url | https://bioconductor.org/packages/erccdashboard/ |
| Package Downloads Report | Download Stats |