XDE
XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression
Bioconductor version: Release (3.20)
Multi-level model for cross-study detection of differential gene expression.
Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland
Maintainer: Robert Scharpf <rscharpf at jhsph.edu>
Citation (from within R, enter
citation("XDE")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XDE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("XDE")
XDE Vignette | R Script | |
XdeParameterClass Vignette | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialExpression, Microarray, Software |
Version | 2.52.0 |
In Bioconductor since | BioC 2.2 (R-2.7) (16.5 years) |
License | LGPL-2 |
Depends | R (>= 2.10.0), Biobase(>= 2.5.5) |
Imports | BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes |
System Requirements | |
URL |
See More
Suggests | MASS, RUnit |
Linking To | |
Enhances | coda |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | XDE_2.52.0.tar.gz |
Windows Binary (x86_64) | XDE_2.52.0.zip |
macOS Binary (x86_64) | XDE_2.52.0.tgz |
macOS Binary (arm64) | XDE_2.52.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/XDE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XDE |
Bioc Package Browser | https://code.bioconductor.org/browse/XDE/ |
Package Short Url | https://bioconductor.org/packages/XDE/ |
Package Downloads Report | Download Stats |