MetaboCoreUtils

Core Utils for Metabolomics Data

Bioconductor version: Release (3.20)

MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.

Author: Johannes Rainer [aut, cre] , Michael Witting [aut] , Andrea Vicini [aut], Liesa Salzer [ctb] , Sebastian Gibb [aut] , Michael Stravs [ctb] , Roger Gine [aut] , Philippine Louail [aut]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MetaboCoreUtils")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaboCoreUtils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaboCoreUtils")

Core Utils for Metabolomics Data	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, MassSpectrometry, Metabolomics, Software
Version	1.14.0
In Bioconductor since	BioC 3.13 (R-4.1) (3.5 years)
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	utils, MsCoreUtils, BiocParallel, methods, stats
System Requirements
URL	https://github.com/RforMassSpectrometry/MetaboCoreUtils
Bug Reports	https://github.com/RforMassSpectrometry/MetaboCoreUtils/issues

Suggests	BiocStyle, testthat, knitr, rmarkdown, robustbase
Linking To
Enhances
Depends On Me
Imports Me	CompoundDb, MetaboAnnotation, Spectra, xcms
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetaboCoreUtils_1.14.0.tar.gz
Windows Binary (x86_64)	MetaboCoreUtils_1.14.0.zip (64-bit only)
macOS Binary (x86_64)	MetaboCoreUtils_1.14.0.tgz
macOS Binary (arm64)	MetaboCoreUtils_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MetaboCoreUtils
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetaboCoreUtils
Bioc Package Browser	https://code.bioconductor.org/browse/MetaboCoreUtils/
Package Short Url	https://bioconductor.org/packages/MetaboCoreUtils/
Package Downloads Report	Download Stats