ExperimentSubset
Manages subsets of data with Bioconductor Experiment objects
Bioconductor version: Release (3.20)
Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.
Author: Irzam Sarfraz [aut, cre] 
, Muhammad Asif [aut, ths] , Joshua D. Campbell [aut]
Maintainer: Irzam Sarfraz <irzam9095 at gmail.com>
citation("ExperimentSubset")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentSubset")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentSubset")| An introduction to ExperimentSubset class | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment, SpatialExperiment, TreeSummarizedExperiment |
| Imports | methods, Matrix, S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran, scater, scds, TENxPBMCData, airway |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExperimentSubset_1.16.0.tar.gz |
| Windows Binary (x86_64) | ExperimentSubset_1.16.0.zip |
| macOS Binary (x86_64) | ExperimentSubset_1.16.0.tgz |
| macOS Binary (arm64) | ExperimentSubset_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExperimentSubset |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExperimentSubset |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExperimentSubset/ |
| Package Short Url | https://bioconductor.org/packages/ExperimentSubset/ |
| Package Downloads Report | Download Stats |