CardinalIO
Read and write mass spectrometry imaging files
Bioconductor version: Release (3.20)
Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.
Author: Kylie Ariel Bemis [aut, cre]
Maintainer: Kylie Ariel Bemis <k.bemis at northeastern.edu>
Citation (from within R, enter
citation("CardinalIO")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CardinalIO")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CardinalIO")| Parsing and writing imzML files | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, ImagingMassSpectrometry, Infrastructure, MassSpectrometry, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | Artistic-2.0 | file LICENSE |
| Depends | R (>= 4.4), BiocParallel, matter, ontologyIndex |
| Imports | methods, S4Vectors, stats, utils, tools |
| System Requirements | |
| URL | http://www.cardinalmsi.org |
| Bug Reports | https://github.com/kuwisdelu/CardinalIO/issues |
See More
| Suggests | BiocStyle, testthat, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | Cardinal |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CardinalIO_1.4.0.tar.gz |
| Windows Binary (x86_64) | CardinalIO_1.4.0.zip |
| macOS Binary (x86_64) | CardinalIO_1.4.0.tgz |
| macOS Binary (arm64) | CardinalIO_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CardinalIO |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CardinalIO |
| Bioc Package Browser | https://code.bioconductor.org/browse/CardinalIO/ |
| Package Short Url | https://bioconductor.org/packages/CardinalIO/ |
| Package Downloads Report | Download Stats |