vidger

DOI: 10.18129/B9.bioc.vidger    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see vidger.

Create rapid visualizations of RNAseq data in R

Bioconductor version: 3.7

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Author: Brandon Monier, Adam McDermaid, Qin Ma

Maintainer: Brandon Monier <brandon.monier at sdstate.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("vidger")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vidger")

 

HTML	R Script	Visualizing RNA-seq data with ViDGER
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Software, Visualization
Version	1.0.0
License	GPL-2 | file LICENSE
Depends	R (>= 3.5)
Imports	Biobase, DESeq2, edgeR, knitr, rmarkdown, GGally, ggplot2, scales, stats, SummarizedExperiment, tidyr, utils
LinkingTo
Suggests	testthat, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	vidger_1.0.0.tar.gz
Windows Binary	vidger_1.0.0.zip
Mac OS X 10.11 (El Capitan)	vidger_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/vidger
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/vidger
Package Short Url	http://bioconductor.org/packages/vidger/
Package Downloads Report	Download Stats