phenoDist

DOI: 10.18129/B9.bioc.phenoDist    

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see phenoDist.

Phenotypic distance measures

Bioconductor version: 3.7

PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.

Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros

Maintainer: Xian Zhang <xianzhang at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenoDist")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phenoDist")

 

PDF	R Script	Introduction to phenoDist
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Software
Version	1.27.0
In Bioconductor since	BioC 2.8 (R-2.13) (7.5 years)
License	LGPL-2.1
Depends	R (>= 2.9.0), imageHTS, e1071
Imports
LinkingTo
Suggests	GOstats, MASS
SystemRequirements
Enhances
URL	http://www.dkfz.de/signaling http://www.embl.de/research/units/genome_biology/huber/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	phenoDist_1.27.0.tar.gz
Windows Binary	phenoDist_1.27.0.zip
Mac OS X 10.11 (El Capitan)	phenoDist_1.27.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/phenoDist
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/phenoDist
Package Short Url	http://bioconductor.org/packages/phenoDist/
Package Downloads Report	Download Stats