gaucho

DOI: 10.18129/B9.bioc.gaucho    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see gaucho.

Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering

Bioconductor version: 3.7

Use genetic algorithms to determine the relationship between clones in heterogenous populations such as cancer sequencing samples

Author: Alex Murison [aut, cre], Christopher Wardell [aut, cre]

Maintainer: Alex Murison <Alexander.Murison at icr.ac.uk>, Christopher Wardell <Christopher.Wardell at icr.ac.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaucho")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaucho")

 

PDF	R Script	An introduction to gaucho
PDF		Reference Manual
Text		NEWS

Details

biocViews	Genetics, SNP, Sequencing, Software, SomaticMutation
Version	1.16.0
In Bioconductor since	BioC 2.14 (R-3.1) (4.5 years)
License	GPL-3
Depends	R (>= 3.0.0), compiler, GA, graph, heatmap.plus, png, Rgraphviz
Imports
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gaucho_1.16.0.tar.gz
Windows Binary	gaucho_1.16.0.zip
Mac OS X 10.11 (El Capitan)	gaucho_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gaucho
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gaucho
Package Short Url	http://bioconductor.org/packages/gaucho/
Package Downloads Report	Download Stats