SigFuge

DOI: 10.18129/B9.bioc.SigFuge    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see SigFuge.

SigFuge

Bioconductor version: 3.7

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <patrick.kimes at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SigFuge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SigFuge")

 

PDF	R Script	SigFuge Tutorial
PDF		Reference Manual

Details

biocViews	Clustering, RNASeq, Software, Visualization
Version	1.18.0
In Bioconductor since	BioC 2.13 (R-3.0) (5 years)
License	GPL-3
Depends	R (>= 3.1.1), GenomicRanges
Imports	ggplot2, matlab, reshape, sigclust
LinkingTo
Suggests	org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SigFuge_1.18.0.tar.gz
Windows Binary	SigFuge_1.18.0.zip
Mac OS X 10.11 (El Capitan)	SigFuge_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SigFuge
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SigFuge
Package Short Url	http://bioconductor.org/packages/SigFuge/
Package Downloads Report	Download Stats