This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see NetSAM.
Bioconductor version: 3.7
The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.
Author: Jing Wang <jing.wang.2 at vanderbilt.edu>
Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>
Citation (from within R,
enter citation("NetSAM")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("NetSAM")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NetSAM")
R Script | NetSAM | |
Reference Manual |
biocViews | Network, Software, Visualization |
Version | 1.20.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (5 years) |
License | LGPL |
Depends | R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0) |
Imports | methods |
LinkingTo | |
Suggests | RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | NetSAM_1.20.0.tar.gz |
Windows Binary | NetSAM_1.20.0.zip |
Mac OS X 10.11 (El Capitan) | NetSAM_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/NetSAM |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NetSAM |
Package Short Url | http://bioconductor.org/packages/NetSAM/ |
Package Downloads Report | Download Stats |
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