CytoML

DOI: 10.18129/B9.bioc.CytoML    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CytoML.

GatingML interface for openCyto

Bioconductor version: 3.7

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

Author: Mike Jiang

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CytoML")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CytoML")

 

HTML	R Script	How to export a GatingSet to GatingML
HTML	R Script	How to parse gatingML into a GatingSet
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, FlowCytometry, Software
Version	1.6.5
In Bioconductor since	BioC 3.4 (R-3.3) (2 years)
License	Artistic-2.0
Depends
Imports	flowCore(>= 1.43.10), flowWorkspace(>= 3.28.1), openCyto(>= 1.11.3), XML, data.table, flowUtils(>= 1.35.7), jsonlite, RBGL, ncdfFlow, Rgraphviz, Biobase, methods, graph, graphics, utils, base64enc, plyr, grDevices, methods, ggcyto(>= 1.8.2)
LinkingTo
Suggests	testthat, flowWorkspaceData(>= 2.11.1), knitr, parallel
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CytoML_1.6.5.tar.gz
Windows Binary	CytoML_1.6.5.zip
Mac OS X 10.11 (El Capitan)	CytoML_1.6.5.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CytoML
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CytoML
Package Short Url	http://bioconductor.org/packages/CytoML/
Package Downloads Report	Download Stats