Cardinal

DOI: 10.18129/B9.bioc.Cardinal    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see Cardinal.

A mass spectrometry imaging toolbox for statistical analysis

Bioconductor version: 3.7

Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Cardinal")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Cardinal")

 

PDF	R Script	Cardinal design and development
PDF	R Script	Cardinal: Analytic tools for mass spectrometry imaging
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Clustering, ImagingMassSpectrometry, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Software
Version	1.12.1
In Bioconductor since	BioC 3.1 (R-3.2) (3.5 years)
License	Artistic-2.0
Depends	BiocGenerics, Biobase, graphics, matter, methods, stats, ProtGenerics
Imports	grDevices, grid, irlba, lattice, signal, sp, stats4, utils
LinkingTo
Suggests	BiocStyle, testthat
SystemRequirements
Enhances
URL	http://www.cardinalmsi.org
Depends On Me	CardinalWorkflows
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Cardinal_1.12.1.tar.gz
Windows Binary	Cardinal_1.12.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	Cardinal_1.12.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Cardinal
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Cardinal
Package Short Url	http://bioconductor.org/packages/Cardinal/
Package Downloads Report	Download Stats