CHRONOS

DOI: 10.18129/B9.bioc.CHRONOS    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: 3.7

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CHRONOS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")

 

PDF	R Script	CHRONOS
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology
Version	1.8.1
In Bioconductor since	BioC 3.3 (R-3.3) (2.5 years)
License	GPL-2
Depends	R (>= 3.5)
Imports	XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt
LinkingTo
Suggests	RUnit, BiocGenerics, knitr
SystemRequirements	Java version >= 1.7, Pandoc
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CHRONOS_1.8.1.tar.gz
Windows Binary	CHRONOS_1.8.1.zip
Mac OS X 10.11 (El Capitan)	CHRONOS_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CHRONOS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CHRONOS
Package Short Url	http://bioconductor.org/packages/CHRONOS/
Package Downloads Report	Download Stats