CAFE

DOI: 10.18129/B9.bioc.CAFE    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

Bioconductor version: 3.7

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAFE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")

 

PDF	R Script	Manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version	1.16.0
In Bioconductor since	BioC 2.14 (R-3.1) (4.5 years)
License	GPL-3
Depends	R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports	affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
LinkingTo
Suggests	RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CAFE_1.16.0.tar.gz
Windows Binary	CAFE_1.16.0.zip
Mac OS X 10.11 (El Capitan)	CAFE_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CAFE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CAFE
Package Short Url	http://bioconductor.org/packages/CAFE/
Package Downloads Report	Download Stats