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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP144.GRCh38")
In most cases, you don't need to download the package archive at all.
SNPlocs.Hsapiens.dbSNP144.GRCh38
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SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: Release (3.5)
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
Author: Hervé Pagès
Maintainer: H. Pagès <hpages at fredhutch.org>
Citation (from within R,
enter citation("SNPlocs.Hsapiens.dbSNP144.GRCh38")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP144.GRCh38")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
| Version | 0.99.20 |
| License | Artistic-2.0 |
| Depends | BSgenome(>= 1.43.4) |
| Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| LinkingTo | |
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg38 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BSgenome, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.20.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | http://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP144.GRCh38/ |
| Package Downloads Report | Download Stats |
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