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- wateRmelon
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wateRmelon")
In most cases, you don't need to download the package archive at all.
wateRmelon
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Illumina 450 methylation array normalization and metrics
Bioconductor version: Release (3.5)
15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.
Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic, Tyler Gorrie-Stone, Louis El Khoury
Maintainer: Leo <lschal at essex.ac.uk>
Citation (from within R,
enter citation("wateRmelon")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wateRmelon")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("wateRmelon")
| R Script | The \Rpackage{wateRmelon} Package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.20.3 |
| In Bioconductor since | BioC 2.12 (R-3.0) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.10), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio |
| Imports | Biobase |
| LinkingTo | |
| Suggests | RPMM |
| SystemRequirements | |
| Enhances | minfi |
| URL | |
| Depends On Me | bigmelon, skewr |
| Imports Me | ChAMP, ENmix |
| Suggests Me | RnBeads |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | wateRmelon_1.20.3.tar.gz |
| Windows Binary | wateRmelon_1.20.3.zip |
| Mac OS X 10.11 (El Capitan) | wateRmelon_1.20.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/wateRmelon |
| Package Short Url | http://bioconductor.org/packages/wateRmelon/ |
| Package Downloads Report | Download Stats |
Documentation »
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