To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")

In most cases, you don't need to download the package archive at all.

TarSeqQC

   

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see TarSeqQC.

TARgeted SEQuencing Experiment Quality Control

Bioconductor version: 3.3

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

Author: Gabriela A. Merino, Cristobal Fresno and Elmer A. Fernandez

Maintainer: Gabriela Merino <gmerino at bdmg.com.ar>

Citation (from within R, enter citation("TarSeqQC")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TarSeqQC")

 

PDF R Script TarSeqQC: Targeted Sequencing Experiment Quality Control
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization
Version 1.2.0
In Bioconductor since BioC 3.2 (R-3.2) (1 year)
License GPL (>=2)
Depends R (>= 3.2.1), methods, GenomicRanges, Rsamtools(>= 1.20.4), ggplot2, plyr, openxlsx
Imports S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, cowplot, Biostrings
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL http://www.bdmg.com.ar
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TarSeqQC_1.2.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks) TarSeqQC_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/TarSeqQC/tree/release-3.3
Package Short Url http://bioconductor.org/packages/TarSeqQC/
Package Downloads Report Download Stats

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