sigPathway

DOI: 10.18129/B9.bioc.sigPathway  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigPathway.

Pathway Analysis

Bioconductor version: Release (3.17)

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at alum.mit.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigPathway")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DifferentialExpression, MultipleComparison, Software
Version	1.68.0
In Bioconductor since	BioC 1.9 (R-2.4) (17 years)
License	GPL-2
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)
SystemRequirements
Enhances
URL	http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/sigPathway
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sigPathway
Package Short Url	https://bioconductor.org/packages/sigPathway/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive