sangerseqR

DOI: 10.18129/B9.bioc.sangerseqR  

Tools for Sanger Sequencing Data in R

Bioconductor version: Release (3.17)

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at byu.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sangerseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sangerseqR")

 

HTML	R Script	Using the sangerseqR package
PDF		Reference Manual

Details

biocViews	SNP, Sequencing, Software, Visualization
Version	1.36.0
In Bioconductor since	BioC 2.14 (R-3.1) (9.5 years)
License	GPL-2
Depends	R (>= 3.5.0), Biostrings, stringr
Imports	methods, shiny
LinkingTo
Suggests	BiocStyle, knitr, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me	sangeranalyseR
Imports Me	scifer
Suggests Me	CrispRVariants
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sangerseqR_1.36.0.tar.gz
Windows Binary	sangerseqR_1.36.0.zip
macOS Binary (x86_64)	sangerseqR_1.36.0.tgz
macOS Binary (arm64)	sangerseqR_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sangerseqR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sangerseqR
Bioc Package Browser	https://code.bioconductor.org/browse/sangerseqR/
Package Short Url	https://bioconductor.org/packages/sangerseqR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive