gpuMagic

DOI: 10.18129/B9.bioc.gpuMagic  

An openCL compiler with the capacity to compile R functions and run the code on GPU

Bioconductor version: Release (3.17)

The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.

Author: Jiefei Wang [aut, cre], Martin Morgan [aut]

Maintainer: Jiefei Wang <szwjf08 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gpuMagic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gpuMagic")

 

HTML	R Script	Customized_opencl_code
HTML	R Script	quickStart
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.16.0
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	GPL-3
Depends	R (>= 3.6.0), methods, utils
Imports	Deriv, DescTools, digest, pryr, stringr, BiocGenerics
LinkingTo	Rcpp
Suggests	testthat, knitr, rmarkdown, BiocStyle
SystemRequirements	1. C++11, 2. a graphic driver or a CPU SDK. 3. ICD loader For Windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For Linux user (Except mac): ocl-icd-opencl-dev package is required. For Mac user, no action is needed for the system has installed the dependency. 4. GNU make
Enhances
URL
BugReports	https://github.com/Jiefei-Wang/gpuMagic/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gpuMagic_1.16.0.tar.gz
Windows Binary	gpuMagic_1.16.0.zip
macOS Binary (x86_64)	gpuMagic_1.16.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gpuMagic
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gpuMagic
Bioc Package Browser	https://code.bioconductor.org/browse/gpuMagic/
Package Short Url	https://bioconductor.org/packages/gpuMagic/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive