S4Arrays

DOI: 10.18129/B9.bioc.S4Arrays  

Foundation of array-like containers in Bioconductor

Bioconductor version: Release (3.17)

The S4Arrays package defines the Array virtual class to be extended by other S4 classes that wish to implement a container with an array-like semantic. It also provides: (1) low-level functionality meant to help the developer of such container to implement basic operations like display, subsetting, or coercion of their array-like objects to an ordinary matrix or array, and (2) a framework that facilitates block processing of array-like objects (typically on-disk objects).

Author: Hervé Pagès [aut, cre]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("S4Arrays")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("S4Arrays")

 

HTML	R Script	A quick overview of the S4Arrays package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.0.6
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.3.0), methods, Matrix, abind, BiocGenerics(>= 0.45.2), S4Vectors, IRanges
Imports	stats, crayon
LinkingTo	S4Vectors
Suggests	BiocParallel, SparseArray(>= 0.0.4), DelayedArray, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://bioconductor.org/packages/S4Arrays
BugReports	https://github.com/Bioconductor/S4Arrays/issues
Depends On Me	DelayedArray, SparseArray
Imports Me	HDF5Array, SummarizedExperiment
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	S4Arrays_1.0.6.tar.gz
Windows Binary	S4Arrays_1.0.6.zip
macOS Binary (x86_64)	S4Arrays_1.0.6.tgz
macOS Binary (arm64)	S4Arrays_1.0.6.tgz
Source Repository	git clone https://git.bioconductor.org/packages/S4Arrays
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/S4Arrays
Bioc Package Browser	https://code.bioconductor.org/browse/S4Arrays/
Package Short Url	https://bioconductor.org/packages/S4Arrays/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive