ExiMiR

DOI: 10.18129/B9.bioc.ExiMiR  

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: Release (3.17)

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExiMiR")

 

PDF	R Script	Description of ExiMiR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel
Version	2.42.0
In Bioconductor since	BioC 2.8 (R-2.13) (12.5 years)
License	GPL-2
Depends	R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma
Imports	affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
LinkingTo
Suggests	mirna10cdf
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ExiMiR_2.42.0.tar.gz
Windows Binary	ExiMiR_2.42.0.zip
macOS Binary (x86_64)	ExiMiR_2.42.0.tgz
macOS Binary (arm64)	ExiMiR_2.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ExiMiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ExiMiR
Bioc Package Browser	https://code.bioconductor.org/browse/ExiMiR/
Package Short Url	https://bioconductor.org/packages/ExiMiR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive