BioTIP

DOI: 10.18129/B9.bioc.BioTIP  

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: Release (3.17)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioTIP")

 

HTML	R Script	BioTIP- an R package for characterization of Biological Tipping-Point
PDF		Reference Manual

Details

biocViews	GeneExpression, RNASeq, Sequencing, Software, Transcription
Version	1.14.0
In Bioconductor since	BioC 3.10 (R-3.6) (4 years)
License	GPL-2
Depends	R (>= 3.6)
Imports	igraph, cluster, psych, stringr, GenomicRanges, MASS, scran
LinkingTo
Suggests	knitr, markdown, base, rmarkdown, ggplot2
SystemRequirements
Enhances
URL	https://github.com/xyang2uchicago/BioTIP
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioTIP_1.14.0.tar.gz
Windows Binary	BioTIP_1.14.0.zip
macOS Binary (x86_64)	BioTIP_1.14.0.tgz
macOS Binary (arm64)	BioTIP_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioTIP
Bioc Package Browser	https://code.bioconductor.org/browse/BioTIP/
Package Short Url	https://bioconductor.org/packages/BioTIP/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive