BSgenomeForge

DOI: 10.18129/B9.bioc.BSgenomeForge  

Forge BSgenome data packages

Bioconductor version: Release (3.17)

A set of tools to forge BSgenome data packages. Supersedes the old seed-based tools from the BSgenome software package. This package allows the user to create a BSgenome data package in one function call, simplifying the old seed-based process.

Author: Hervé Pagès [aut, cre], Atuhurira Kirabo Kakopo [aut], Emmanuel Chigozie Elendu [ctb], Prisca Chidimma Maduka [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenomeForge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BSgenomeForge")

 

HTML	R Script	How to use the BSgenomeForge package to forge a BSgenome data package
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Annotation, DataImport, DataRepresentation, Genetics, GenomeAnnotation, Infrastructure, SequenceMatching, Sequencing, Software
Version	1.0.1
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.3.0), methods, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb(>= 1.33.17), Biostrings, BSgenome
Imports	utils, stats, Biobase, rtracklayer
LinkingTo
Suggests	GenomicRanges, GenomicFeatures, testthat, knitr, rmarkdown, BiocStyle, devtools
SystemRequirements
Enhances
URL	https://bioconductor.org/packages/BSgenomeForge
BugReports	https://github.com/Bioconductor/BSgenomeForge/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenomeForge_1.0.1.tar.gz
Windows Binary
macOS Binary (x86_64)	BSgenomeForge_1.0.1.tgz
macOS Binary (arm64)	BSgenomeForge_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BSgenomeForge
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BSgenomeForge
Bioc Package Browser	https://code.bioconductor.org/browse/BSgenomeForge/
Package Short Url	https://bioconductor.org/packages/BSgenomeForge/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive