miRmine

DOI: 10.18129/B9.bioc.miRmine  

Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment

Bioconductor version: Release (3.16)

miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment.

Author: Dusan Randjelovic [aut, cre]

Maintainer: Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>

Citation (from within R, enter citation("miRmine")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miRmine")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRmine")

 

HTML R Script miRmine
PDF   Reference Manual
Text   NEWS

Details

biocViews ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData, Software
Version 1.20.0
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License GPL (>= 3)
Depends R (>= 3.5.0), SummarizedExperiment
Imports
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, DESeq2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRmine_1.20.0.tar.gz
Windows Binary miRmine_1.20.0.zip
macOS Binary (x86_64) miRmine_1.20.0.tgz
macOS Binary (arm64) miRmine_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRmine
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRmine
Bioc Package Browser https://code.bioconductor.org/browse/miRmine/
Package Short Url https://bioconductor.org/packages/miRmine/
Package Downloads Report Download Stats

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