cellxgenedp

DOI: 10.18129/B9.bioc.cellxgenedp  

Discover and Access Single Cell Data Sets in the cellxgene Data Portal

Bioconductor version: Release (3.16)

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("cellxgenedp")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellxgenedp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellxgenedp")

 

HTML R Script Discover and download datasets and files from the cellxgene data portal
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, SingleCell, Software, ThirdPartyClient
Version 1.2.2
In Bioconductor since BioC 3.15 (R-4.2) (1 year)
License Artistic-2.0
Depends dplyr
Imports httr, curl, jsonlite, utils, tools, shiny, DT, rjsoncons
LinkingTo
Suggests zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellxgenedp_1.2.2.tar.gz
Windows Binary cellxgenedp_1.2.1.zip
macOS Binary (x86_64) cellxgenedp_1.2.2.tgz
macOS Binary (arm64) cellxgenedp_1.2.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellxgenedp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellxgenedp
Bioc Package Browser https://code.bioconductor.org/browse/cellxgenedp/
Package Short Url https://bioconductor.org/packages/cellxgenedp/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: