TargetSearch

DOI: 10.18129/B9.bioc.TargetSearch  

A package for the analysis of GC-MS metabolite profiling data

Bioconductor version: Release (3.16)

This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.

Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]

Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>

Citation (from within R, enter citation("TargetSearch")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TargetSearch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TargetSearch")

 

PDF R Script RI correction extra
PDF R Script The TargetSearch Package
PDF   Reference Manual
Text   NEWS

Details

biocViews DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software
Version 2.0.0
In Bioconductor since BioC 2.4 (R-2.9) (14 years)
License GPL (>= 2)
Depends
Imports graphics, grDevices, methods, ncdf4, stats, utils, assertthat
LinkingTo
Suggests TargetSearchData, BiocStyle, knitr, tinytest
SystemRequirements
Enhances
URL https://github.com/acinostroza/TargetSearch
BugReports https://github.com/acinostroza/TargetSearch/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TargetSearch_2.0.0.tar.gz
Windows Binary TargetSearch_2.0.0.zip
macOS Binary (x86_64) TargetSearch_2.0.0.tgz
macOS Binary (arm64) TargetSearch_2.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TargetSearch
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TargetSearch
Bioc Package Browser https://code.bioconductor.org/browse/TargetSearch/
Package Short Url https://bioconductor.org/packages/TargetSearch/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: