MSstatsConvert

DOI: 10.18129/B9.bioc.MSstatsConvert  

Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Bioconductor version: Release (3.16)

MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.

Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Citation (from within R, enter citation("MSstatsConvert")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsConvert")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsConvert")

 

HTML R Script Working with MSstatsConvert
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, MassSpectrometry, Proteomics, QualityControl, Software
Version 1.8.3
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports data.table, log4r, methods, checkmate, utils, stringi
LinkingTo
Suggests tinytest, covr, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me MSstats, MSstatsLiP, MSstatsPTM, MSstatsShiny, MSstatsTMT
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsConvert_1.8.3.tar.gz
Windows Binary MSstatsConvert_1.8.3.zip (64-bit only)
macOS Binary (x86_64) MSstatsConvert_1.8.3.tgz
macOS Binary (arm64) MSstatsConvert_1.8.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsConvert
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsConvert
Bioc Package Browser https://code.bioconductor.org/browse/MSstatsConvert/
Package Short Url https://bioconductor.org/packages/MSstatsConvert/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: