ENmix

DOI: 10.18129/B9.bioc.ENmix  

Quality control and analysis tools for Illumina DNA methylation BeadChip

Bioconductor version: Release (3.16)

Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.

Author: Zongli Xu [cre,aut], Liang Niu [aut] , Jack Taylor [ctb]

Maintainer: Zongli Xu <xuz at niehs.nih.gov>

Citation (from within R, enter citation("ENmix")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENmix")

 

HTML R Script ENmix User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel
Version 1.34.02
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License Artistic-2.0
Depends R (>= 3.5.0), parallel, doParallel, foreach, SummarizedExperiment, stats
Imports grDevices, graphics, preprocessCore, matrixStats, methods, utils, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors
LinkingTo
Suggests minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/Bioconductor/ENmix
BugReports https://github.com/Bioconductor/ENmix/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ENmix_1.34.02.tar.gz
Windows Binary ENmix_1.34.02.zip
macOS Binary (x86_64) ENmix_1.34.02.tgz
macOS Binary (arm64) ENmix_1.34.02.tgz
Source Repository git clone https://git.bioconductor.org/packages/ENmix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ENmix
Bioc Package Browser https://code.bioconductor.org/browse/ENmix/
Package Short Url https://bioconductor.org/packages/ENmix/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive

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