annotGeometryMoransI | Univariate spatial stiatistics |
annotGeometryUnivariate | Univariate spatial stiatistics |
calculateMoransI | Univariate spatial stiatistics |
calculateMoransI-method | Univariate spatial stiatistics |
calculateUnivariate | Univariate spatial stiatistics |
calculateUnivariate-method | Univariate spatial stiatistics |
clusterCorrelograms | Find clusters of correlogram patterns |
clusterMoranPlot | Find clusters on the Moran plot |
colDataMoransI | Univariate spatial stiatistics |
colDataUnivariate | Univariate spatial stiatistics |
colFeatureData | Get metadata of colData and rowData |
colGeometryMoransI | Univariate spatial stiatistics |
colGeometryUnivariate | Univariate spatial stiatistics |
ditto_colors | Colorblind friendly palette from dittoSeq |
ElbowPlot | Plot the elbow plot or scree plot for PCA |
getDivergeRange | Get beginning and end of palette to center a divergent palette |
moranPlot | Use ggplot to plot the moran.plot results |
plotAnnotGraph | Plot spatial graphs |
plotCellBin2D | Plot cell density as 2D histogram |
plotColDataBin2D | Plot colData and rowData with 2D histograms |
plotColDataFreqpoly | Plot frequency polygons for colData and rowData columns |
plotColDataHistogram | Plot histograms for colData and rowData columns |
plotColGraph | Plot spatial graphs |
plotCorrelogram | Plot correlogram |
plotDimLoadings | Plot top PC loadings of genes |
plotLocalResult | Plot local results |
plotMoranMC | Plot Moran/Geary monte carlo results |
plotRowDataBin2D | Plot colData and rowData with 2D histograms |
plotRowDataFreqpoly | Plot frequency polygons for colData and rowData columns |
plotRowDataHistogram | Plot histograms for colData and rowData columns |
plotSpatialFeature | Plot gene expression in space |
rowFeatureData | Get metadata of colData and rowData |
runMoransI | Univariate spatial stiatistics |
runUnivariate | Univariate spatial stiatistics |
spatialReducedDim | Plot dimension reduction components in space |