- Home
- Bioconductor 3.1
- Experiment Packages
- ccTutorial
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ccTutorial")
In most cases, you don't need to download the package archive at all.
ccTutorial
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ccTutorial.
Data package for ChIP-chip tutorial
Bioconductor version: 3.1
This is a data package that accompanies a ChIP-chip tutorial, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial.
Author: Joern Toedling, Wolfgang Huber
Maintainer: Joern Toedling <joern.toedling at curie.fr>
Citation (from within R,
enter citation("ccTutorial")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ccTutorial")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ccTutorial")
| R Script | A tutorial on how to analyze ChIP-chip readouts using Bioconductor | |
| R Script | Supplement to A tutorial on how to analyze ChIP-chip readouts using Bioconductor | |
| Reference Manual |
Details
| biocViews | ChipOnChipData, ExperimentData, MicroarrayData, Mus_musculus_Data |
| Version | 1.6.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Ringo(>= 1.9.8), affy(>= 1.23.4), topGO(>= 1.13.1) |
| Imports | Biobase |
| LinkingTo | |
| Suggests | biomaRt, Biobase(>= 2.5.5), xtable |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ccTutorial_1.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/ccTutorial/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
