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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")
In most cases, you don't need to download the package archive at all.
RNAseqData.HNRNPC.bam.chr14
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This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see RNAseqData.HNRNPC.bam.chr14.
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells
Bioconductor version: 3.1
The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.
Author: H. Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("RNAseqData.HNRNPC.bam.chr14")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")
Documentation
| Reference Manual |
Details
| biocViews | ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData |
| Version | 0.6.0 |
| License | LGPL |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | GenomicAlignments, BiocInstaller |
| SystemRequirements | |
| Enhances | |
| URL | http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BiocParallel, GenomicAlignments, GenomicFiles, roar, Rsamtools, SplicingGraphs |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RNAseqData.HNRNPC.bam.chr14_0.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/ |
| Package Downloads Report | Download Stats |
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