To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")

In most cases, you don't need to download the package archive at all.

HiCDataLymphoblast

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see HiCDataLymphoblast.

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Bioconductor version: 3.1

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>

Citation (from within R, enter citation("HiCDataLymphoblast")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")

 

PDF package_vignettes.pdf
PDF   Reference Manual

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.4.0
License GPL-3
Depends
Imports
LinkingTo
Suggests GOTHiC, ShortRead
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me GOTHiC
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HiCDataLymphoblast_1.4.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/HiCDataLymphoblast/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center