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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataHumanIMR90")
In most cases, you don't need to download the package archive at all.
HiCDataHumanIMR90
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This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see HiCDataHumanIMR90.
Human IMR90 Fibroblast HiC data from Dixon et al. 2012
Bioconductor version: 3.1
The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).
Author: Nicolas Servant
Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>
Citation (from within R,
enter citation("HiCDataHumanIMR90")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataHumanIMR90")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCDataHumanIMR90")
| R Script | HiC Data Human Fibroblast Dixon et al. 2012 | |
| Reference Manual |
Details
| biocViews | ExperimentData, GEO, Genome, Homo_sapiens_Data |
| Version | 0.102.0 |
| License | GPL-3 |
| Depends | R (>= 2.10) |
| Imports | |
| LinkingTo | |
| Suggests | HiTC |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | HiTC |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | HiCDataHumanIMR90_0.102.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/HiCDataHumanIMR90/ |
| Package Downloads Report | Download Stats |
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