To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FunciSNP.data")

In most cases, you don't need to download the package archive at all.

FunciSNP.data

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see FunciSNP.data.

Various data sets for use with the FunciSNP package

Bioconductor version: 3.1

Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.

Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>

Maintainer: Simon G. Coetzee <scoetzee at gmail.com>

Citation (from within R, enter citation("FunciSNP.data")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FunciSNP.data")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FunciSNP.data")

 

PDF R Script FunciSNP Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews ENCODE, ExperimentData, Project1000genomes, SNPData
Version 1.4.0
License GPL-3
Depends R (>= 2.14.0), IRanges
Imports rtracklayer
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
Depends On Me FunciSNP
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source FunciSNP.data_1.4.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/FunciSNP.data/
Package Downloads Report Download Stats

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