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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopyhelpeR")
In most cases, you don't need to download the package archive at all.
CopyhelpeR
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see CopyhelpeR.
Helper files for CopywriteR
Bioconductor version: 3.1
This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.
Author: Thomas Kuilman
Maintainer: Thomas Kuilman <t.kuilman at nki.nl>
Citation (from within R,
enter citation("CopyhelpeR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopyhelpeR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyhelpeR")
| R Script | CopyhelpeR | |
| Reference Manual |
Details
| biocViews | ExperimentData, GenomicSequence, Homo_sapiens |
| Version | 1.0.1 |
| License | GPL-2 |
| Depends | R (>= 2.10) |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | CopywriteR |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CopyhelpeR_1.0.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/CopyhelpeR/ |
| Package Downloads Report | Download Stats |
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