To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("viper")

In most cases, you don't need to download the package archive at all.

viper

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see viper.

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: 3.1

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("viper")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

biocViews	FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version	1.4.0
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	GPL (>=2)
Depends	R (>= 2.14.0), Biobase, methods
Imports	mixtools, stats, parallel, e1071, KernSmooth
LinkingTo
Suggests	bcellViper
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	diggit, diggitdata
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	viper_1.4.0.tar.gz
Windows Binary	viper_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)	viper_1.4.0.tgz
Mac OS X 10.9 (Mavericks)	viper_1.4.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/viper/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/viper/
Package Downloads Report	Download Stats

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