To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rain")

In most cases, you don't need to download the package archive at all.

rain

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see rain.

Rhythmicity Analysis Incorporating Non-parametric Methods

Bioconductor version: 3.1

This package uses non-parametric methods to detect rhythms in time series. It deals with outliers, missing values and is optimized for time series comprising 10-100 measurements. As it does not assume expect any distinct waveform it is optimal or detecting oscillating behavior (e.g. circadian or cell cycle) in e.g. genome- or proteome-wide biological measurements such as: micro arrays, proteome mass spectrometry, or metabolome measurements.

Author: Paul F. Thaben, Pål O. Westermark

Maintainer: Paul F. Thaben <paul.thaben at charite.de>

Citation (from within R, enter citation("rain")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rain")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rain")

 

PDF R Script Rain Usage
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Microarray, MultipleComparison, Proteomics, Software, SystemsBiology, TimeCourse
Version 1.2.1
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL-2
Depends R (>= 2.10), gmp, multtest
Imports
LinkingTo
Suggests lattice, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rain_1.2.1.tar.gz
Windows Binary rain_1.2.1.zip
Mac OS X 10.6 (Snow Leopard) rain_1.2.1.tgz
Mac OS X 10.9 (Mavericks) rain_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/rain/tree/release-3.1
Package Short Url http://bioconductor.org/packages/rain/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center