To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRM")

In most cases, you don't need to download the package archive at all.

rTRM

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see rTRM.

Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: 3.1

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

 

PDF R Script Introduction to rTRM
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL-3
Depends R (>= 2.10), igraph (>= 0.7), RSQLite
Imports AnnotationDbi
LinkingTo
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me rTRMui
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rTRM_1.6.0.tar.gz
Windows Binary rTRM_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) rTRM_1.6.0.tgz
Mac OS X 10.9 (Mavericks) rTRM_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/rTRM/tree/release-3.1
Package Short Url http://bioconductor.org/packages/rTRM/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center