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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pepXMLTab")
In most cases, you don't need to download the package archive at all.
pepXMLTab
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see pepXMLTab.
Parsing pepXML files and filter based on peptide FDR.
Bioconductor version: 3.1
Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>
Citation (from within R,
enter citation("pepXMLTab")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pepXMLTab")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pepXMLTab")
| R Script | Introduction to pepXMLTab | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.1) |
| Imports | XML (>= 3.98-1.1) |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pepXMLTab_1.2.0.tar.gz |
| Windows Binary | pepXMLTab_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | pepXMLTab_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | pepXMLTab_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/pepXMLTab/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/pepXMLTab/ |
| Package Downloads Report | Download Stats |
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