To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mzID")
In most cases, you don't need to download the package archive at all.
mzID
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see mzID.
An mzIdentML parser for R
Bioconductor version: 3.1
A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.
Author: Thomas Lin Pedersen, Vladislav A Petyuk with contributions from Laurent Gatto and Sebastian Gibb.
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
Citation (from within R,
enter citation("mzID")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mzID")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mzID")
| R Script | Using mzID | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, MassSpectrometry, Proteomics, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
| License | GPL (>= 2) |
| Depends | methods |
| Imports | XML, plyr, parallel, doParallel, foreach, iterators |
| LinkingTo | |
| Suggests | knitr, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | MSGFgui, MSGFplus, MSnbase, MSnID, Pbase |
| Suggests Me | mzR, RforProteomics |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mzID_1.6.0.tar.gz |
| Windows Binary | mzID_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | mzID_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | mzID_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/mzID/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/mzID/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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