To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mgsa")
In most cases, you don't need to download the package archive at all.
mgsa
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see mgsa.
Model-based gene set analysis
Bioconductor version: 3.1
Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.
Author: Sebastian Bauer <mail at sebastianbauer.info>, Julien Gagneur <gagneur at genzentrum.lmu.de>
Maintainer: Sebastian Bauer <mail at sebastianbauer.info>
Citation (from within R,
enter citation("mgsa")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mgsa")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mgsa")
| R Script | Overview of the mgsa package. | |
| Reference Manual |
Details
| biocViews | GO, GeneSetEnrichment, Pathways, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0), methods, gplots |
| Imports | graphics, stats, utils |
| LinkingTo | |
| Suggests | DBI, RSQLite, GO.db, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/sba1/mgsa-bioc |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gCMAP |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mgsa_1.16.0.tar.gz |
| Windows Binary | mgsa_1.16.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | mgsa_1.16.0.tgz |
| Mac OS X 10.9 (Mavericks) | mgsa_1.16.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/mgsa/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/mgsa/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
