To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iSeq")
In most cases, you don't need to download the package archive at all.
iSeq
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see iSeq.
Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
Bioconductor version: 3.1
This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.
Author: Qianxing Mo
Maintainer: Qianxing Mo <qmo at bcm.edu>
Citation (from within R,
enter citation("iSeq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iSeq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSeq")
| R Script | iSeq | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ChIPSeq, Sequencing, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | iSeq_1.20.0.tar.gz |
| Windows Binary | iSeq_1.20.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | iSeq_1.20.0.tgz |
| Mac OS X 10.9 (Mavericks) | iSeq_1.20.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/iSeq/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/iSeq/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
