To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eiR")
In most cases, you don't need to download the package archive at all.
eiR
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see eiR.
Accelerated similarity searching of small molecules
Bioconductor version: 3.1
The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.
Author: Kevin Horan, Yiqun Cao and Tyler Backman
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
Citation (from within R,
enter citation("eiR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eiR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eiR")
| HTML | R Script | eiR |
| Reference Manual | ||
| Text | README | |
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization |
| Version | 1.8.3 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI |
| Imports | snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics |
| LinkingTo | BH |
| Suggests | RCurl, snow, BiocStyle, knitcitations, knitr, knitrBootstrap |
| SystemRequirements | GSL (>=1.14) http://www.gnu.org/software/gsl/ |
| Enhances | |
| URL | https://github.com/girke-lab/ChemmineR |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | eiR_1.8.3.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | eiR_1.8.3.tgz |
| Mac OS X 10.9 (Mavericks) | eiR_1.8.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/eiR/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/eiR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
