To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cytofkit")

In most cases, you don't need to download the package archive at all.

cytofkit

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see cytofkit.

cytofkit: an integrated analysis pipeline for mass cytometry data

Bioconductor version: 3.1

An integrated mass cytometry data analysis pipeline that enables simultaneous illustration of cellular diversity and progression.

Author: Jinmiao Chen, Hao Chen

Maintainer: Jinmiao Chen <Chen_Jinmiao at immunol.a-star.edu.sg>

Citation (from within R, enter citation("cytofkit")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cytofkit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cytofkit")

 

HTML R Script cytofkit: run with an example
HTML R Script cytofkit: workflow of mass cytometry data analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, CellBiology, Clustering, DimensionReduction, GUI, MassSpectrometry, Software
Version 1.1.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL-3
Depends R (>= 2.10.0)
Imports tcltk, stats, Rtsne, e1071, flowCore, ggplot2, gplots, vegan, reshape, Biobase
LinkingTo
Suggests knitr, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cytofkit_1.1.0.tar.gz
Windows Binary cytofkit_1.1.0.zip
Mac OS X 10.6 (Snow Leopard) cytofkit_1.1.0.tgz
Mac OS X 10.9 (Mavericks) cytofkit_1.1.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cytofkit/tree/release-3.1
Package Short Url http://bioconductor.org/packages/cytofkit/
Package Downloads Report Download Stats

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