To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TEQC")

In most cases, you don't need to download the package archive at all.

TEQC

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see TEQC.

Quality control for target capture experiments

Bioconductor version: 3.1

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma

Maintainer: Manuela Hummel <m.hummel at dkfz.de>

Citation (from within R, enter citation("TEQC")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TEQC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TEQC")

 

PDF R Script TEQC
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Microarray, QualityControl, Sequencing, Software
Version 3.8.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL (>= 2)
Depends methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.5), Rsamtools, hwriter
Imports Biobase(>= 2.15.1)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TEQC_3.8.0.tar.gz
Windows Binary TEQC_3.8.0.zip
Mac OS X 10.6 (Snow Leopard) TEQC_3.8.0.tgz
Mac OS X 10.9 (Mavericks) TEQC_3.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/TEQC/tree/release-3.1
Package Short Url http://bioconductor.org/packages/TEQC/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center